RNAlib-2.5.1
ali_plex.h
1#ifndef VIENNA_RNA_PACKAGE_ALI_PLEX_H
2#define VIENNA_RNA_PACKAGE_ALI_PLEX_H
3
5
6#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
7
11duplexT **aliLduplexfold(const char *s1[],
12 const char *s2[],
13 const int threshold,
14 const int extension_cost,
15 const int alignment_length,
16 const int delta,
17 const int fast,
18 const int il_a,
19 const int il_b,
20 const int b_a,
21 const int b_b);
22
23
27duplexT **aliLduplexfold_XS(const char *s1[],
28 const char *s2[],
29 const int **access_s1,
30 const int **access_s2,
31 const int threshold,
32 const int alignment_length,
33 const int delta,
34 const int fast,
35 const int il_a,
36 const int il_b,
37 const int b_a,
38 const int b_b);
39
40
41/*
42 * extern duplexT aliduplexfold(const char *s1[], const char *s2[], const int extension_cost);
43 * extern duplexT aliduplexfold_XS(const char *s1[], const char *s2[],const int **access_s1,
44 * const int **access_s2, const int i_pos, const int j_pos, const int threshold);
45 */
46#endif
47
48#endif
Various data structures and pre-processor macros.
Data structure for RNAduplex.
Definition: basic.h:211