2#ifndef VIENNA_RNA_PACKAGE_SNOFOLD_H
3#define VIENNA_RNA_PACKAGE_SNOFOLD_H
7#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
14int snofold(
const char *sequence,
21 const int max_half_stem);
28void snofree_arrays(
const int length);
31void snoinitialize_fold(
int length);
34void snoupdate_fold_params(
void);
37int snoloop_energy(
short *ptable,
43void snoexport_fold_arrays(
int **indx_p,
50char *snobacktrack_fold_from_pair(
const char *sequence,
56float alisnofold(
const char **strings,
62 const int max_half_stem);
65void alisnofree_arrays(
const int length);
68char *alisnobacktrack_fold_from_pair(
const char **sequence,
double nc_fact
This variable controls the magnitude of the penalty for non-compatible sequences in the covariance te...
double cv_fact
This variable controls the weight of the covariance term in the energy function of alignment folding ...
Various data structures and pre-processor macros.
Data structure for RNAsnoop (fold energy list)
Definition: basic.h:239