1#ifndef VIENNA_RNA_PACKAGE_PLOT_PROBABILITIES_H
2#define VIENNA_RNA_PACKAGE_PLOT_PROBABILITIES_H
8#ifdef VRNA_WARN_DEPRECATED
10# define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
11# elif defined(__GNUC__)
12# define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
14# define DEPRECATED(func, msg) func
17# define DEPRECATED(func, msg) func
32#define VRNA_PLOT_PROBABILITIES_BP 1U
33#define VRNA_PLOT_PROBABILITIES_ACC 2U
35#define VRNA_PLOT_PROBABILITIES_UD 4U
36#define VRNA_PLOT_PROBABILITIES_UD_LIN 8U
38#define VRNA_PLOT_PROBABILITIES_SD 16U
40#define VRNA_PLOT_PROBABILITIES_SC_MOTIF 32U
41#define VRNA_PLOT_PROBABILITIES_SC_UP 64U
42#define VRNA_PLOT_PROBABILITIES_SC_BP 128U
44#define VRNA_PLOT_PROBABILITIES_DEFAULT (VRNA_PLOT_PROBABILITIES_BP \
45 | VRNA_PLOT_PROBABILITIES_SD \
46 | VRNA_PLOT_PROBABILITIES_SC_MOTIF \
47 | VRNA_PLOT_PROBABILITIES_UD_LIN)
67vrna_plot_dp_EPS(
const char *filename,
72 unsigned int options);
76vrna_plot_dp_PS_list(
char *seq,
84#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
87PS_color_dot_plot(
char *
string,
93PS_color_dot_plot_turn(
char *seq,
100PS_dot_plot_turn(
char *seq,
149 "Use vrna_plot_dp_EPS() instead");
Various data structures and pre-processor macros.
this datastructure is used as input parameter in functions of PS_dot.c
Definition: basic.h:112
int PS_dot_plot_list(char *seq, char *filename, vrna_ep_t *pl, vrna_ep_t *mf, char *comment)
Produce a postscript dot-plot from two pair lists.
int PS_dot_plot(char *string, char *file)
Produce postscript dot-plot.
Definition: probabilities.h:48
Data structure representing a single entry of an element probability list (e.g. list of pair probabil...
Definition: structures.h:482
Various utility- and helper-functions for secondary structure parsing, converting,...