C_struct_en | Data structure for energy_of_move() |
Cconstrain | Constraints for cofolding |
CCOORDINATE | This is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type COORDINATE |
CduplexT | Data structure for RNAduplex |
CdupVar | Data structure used in RNApkplex |
Cinteract | Interaction data structure for RNAup |
CLIST | |
CLST_BUCKET | |
Cnode | Data structure for RNAsnoop (fold energy list) |
CPostorder_list | Postorder data structure |
Cpu_contrib | Contributions to p_u |
Cpu_out | Collection of all free_energy of beeing unpaired values for output |
CsnoopT | Data structure for RNAsnoop |
CswString | Some other data structure |
CTree | Tree data structure |
CTwoDfold_vars | Variables compound for 2Dfold MFE folding |
CTwoDpfold_vars | Variables compound for 2Dfold partition function folding |
Cvrna_alignment_s | |
Cvrna_basepair_s | Base pair data structure used in subopt.c |
Cvrna_bp_stack_s | Base pair stack element |
Cvrna_color_s | |
Cvrna_cpair_s | This datastructure is used as input parameter in functions of PS_dot.c |
Cvrna_data_linear_s | |
Cvrna_dimer_conc_s | Data structure for concentration dependency computations |
Cvrna_dimer_pf_s | Data structure returned by vrna_pf_dimer() |
Cvrna_dotplot_auxdata_t | |
Cvrna_elem_prob_s | Data structure representing a single entry of an element probability list (e.g. list of pair probabilities) |
Cvrna_exp_param_s | The data structure that contains temperature scaled Boltzmann weights of the energy parameters |
Cvrna_fc_s | The most basic data structure required by many functions throughout the RNAlib |
Cvrna_gr_aux_s | |
Cvrna_hc_s | The hard constraints data structure |
Cvrna_hc_up_s | A single hard constraint for a single nucleotide |
Cvrna_heat_capacity_s | A single result from heat capacity computations |
Cvrna_ht_entry_db_t | Default hash table entry |
Cvrna_hx_s | Data structure representing an entry of a helix list |
Cvrna_md_s | The data structure that contains the complete model details used throughout the calculations |
Cvrna_move_s | An atomic representation of the transition / move from one structure to its neighbor |
Cvrna_multimer_pf_s | |
Cvrna_mx_mfe_s | Minimum Free Energy (MFE) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound_t |
Cvrna_mx_pf_s | Partition function (PF) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound_t |
Cvrna_param_s | The datastructure that contains temperature scaled energy parameters |
Cvrna_path_s | An element of a refolding path list |
Cvrna_pinfo_s | A base pair info structure |
Cvrna_pk_plex_result_s | A result of the RNA PKplex interaction prediction |
Cvrna_plot_layout_s | |
Cvrna_plot_options_puzzler_t | Options data structure for RNApuzzler algorithm implementation |
Cvrna_sc_bp_storage_t | A base pair constraint |
Cvrna_sc_motif_s | |
Cvrna_sc_s | The soft constraints data structure |
Cvrna_sect_s | Stack of partial structures for backtracking |
Cvrna_sequence_s | Data structure representing a nucleotide sequence |
Cvrna_sol_TwoD_pf_t | Solution element returned from vrna_pf_TwoD() |
Cvrna_sol_TwoD_t | Solution element returned from vrna_mfe_TwoD() |
Cvrna_structured_domains_s | |
Cvrna_subopt_sol_s | Solution element from subopt.c |
Cvrna_unstructured_domain_motif_s | |
Cvrna_unstructured_domain_s | Data structure to store all functionality for ligand binding |