1#ifndef VIENNA_RNA_PACKAGE_CONSTRAINTS_H
2#define VIENNA_RNA_PACKAGE_CONSTRAINTS_H
99#define VRNA_CONSTRAINT_FILE 0
107#define VRNA_CONSTRAINT_SOFT_MFE 0
115#define VRNA_CONSTRAINT_SOFT_PF VRNA_OPTION_PF
129#define VRNA_DECOMP_PAIR_HP (unsigned char)1
144#define VRNA_DECOMP_PAIR_IL (unsigned char)2
159#define VRNA_DECOMP_PAIR_ML (unsigned char)3
160#define VRNA_DECOMP_PAIR_ML_EXT (unsigned char)23
162#define VRNA_DECOMP_PAIR_ML_OUTSIDE (unsigned char)4
176#define VRNA_DECOMP_ML_ML_ML (unsigned char)5
191#define VRNA_DECOMP_ML_STEM (unsigned char)6
206#define VRNA_DECOMP_ML_ML (unsigned char)7
222#define VRNA_DECOMP_ML_UP (unsigned char)8
238#define VRNA_DECOMP_ML_ML_STEM (unsigned char)9
254#define VRNA_DECOMP_ML_COAXIAL (unsigned char)10
270#define VRNA_DECOMP_ML_COAXIAL_ENC (unsigned char)11
286#define VRNA_DECOMP_EXT_EXT (unsigned char)12
302#define VRNA_DECOMP_EXT_UP (unsigned char)13
317#define VRNA_DECOMP_EXT_STEM (unsigned char)14
332#define VRNA_DECOMP_EXT_EXT_EXT (unsigned char)15
348#define VRNA_DECOMP_EXT_STEM_EXT (unsigned char)16
356#define VRNA_DECOMP_EXT_STEM_OUTSIDE (unsigned char)17
372#define VRNA_DECOMP_EXT_EXT_STEM (unsigned char)18
389#define VRNA_DECOMP_EXT_EXT_STEM1 (unsigned char)19
391#define VRNA_DECOMP_EXT_STEM_EXT1 (unsigned char)20
393#define VRNA_DECOMP_EXT_L (unsigned char)21
394#define VRNA_DECOMP_EXT_EXT_L (unsigned char)22
440 const char *constraint,
441 unsigned int options);
The Basic Fold Compound API.
void vrna_constraints_add(vrna_fold_compound_t *vc, const char *constraint, unsigned int options)
Add constraints to a vrna_fold_compound_t data structure.
The most basic data structure required by many functions throughout the RNAlib.
Definition: fold_compound.h:148