Create Plots of Secondary Structures, Feature Motifs, and Sequence Alignments
int PS_rna_plot ( char *string, char *structure, char *file)
Produce a secondary structure graph in PostScript and write it to 'filename'.
int PS_rna_plot_a ( char *string, char *structure, char *file, char *pre, char *post)
Produce a secondary structure graph in PostScript including additional annotation macros and write it to 'filename'.
int gmlRNA (char *string, char *structure, char *ssfile, char option)
Produce a secondary structure graph in Graph Meta Language (gml) and write it to a file.
int ssv_rna_plot (char *string, char *structure, char *ssfile)
Produce a secondary structure graph in SStructView format.
int svg_rna_plot (char *string, char *structure, char *ssfile)
Produce a secondary structure plot in SVG format and write it to a file.
int xrna_plot ( char *string, char *structure, char *ssfile)
Produce a secondary structure plot for further editing in XRNA.
int rna_plot_type
Switch for changing the secondary structure layout algorithm.
Two low-level functions provide direct access to the graph lauyouting algorithms:
int simple_xy_coordinates ( short *pair_table, float *X, float *Y)
Calculate nucleotide coordinates for secondary structure plot the Simple way
int naview_xy_coordinates ( short *pair_table, float *X, float *Y)
int PS_color_dot_plot ( char *string, cpair *pi, char *filename)
int PS_color_dot_plot_turn (char *seq, cpair *pi, char *filename, int winSize)
int PS_dot_plot_list (char *seq, char *filename, plist *pl, plist *mf, char *comment)
Produce a postscript dot-plot from two pair lists.
int PS_dot_plot_turn (char *seq, struct plist *pl, char *filename, int winSize)
int PS_color_aln ( const char *structure, const char *filename, const char *seqs[], const char *names[])
Produce PostScript sequence alignment color-annotated by consensus structure.