1#ifndef VIENNA_RNA_PACKAGE_CONCENTRATIONS_H
2#define VIENNA_RNA_PACKAGE_CONCENTRATIONS_H
4#ifdef VRNA_WARN_DEPRECATED
6# define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
7# elif defined(__GNUC__)
8# define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
10# define DEPRECATED(func, msg) func
13# define DEPRECATED(func, msg) func
31#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
80 const double *startconc,
84vrna_equilibrium_constants(
const double *dG_complexes,
85 const double *dG_strands,
86 const unsigned int **A,
95#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
129 "Use vrna_pf_dimer_concentrations() instead");
vrna_dimer_conc_t * get_concentrations(double FEAB, double FEAA, double FEBB, double FEA, double FEB, double *startconc)
Given two start monomer concentrations a and b, compute the concentrations in thermodynamic equilibri...
The data structure that contains temperature scaled Boltzmann weights of the energy parameters.
Definition: basic.h:103
vrna_dimer_conc_t * vrna_pf_dimer_concentrations(double FcAB, double FcAA, double FcBB, double FEA, double FEB, const double *startconc, const vrna_exp_param_t *exp_params)
Given two start monomer concentrations a and b, compute the concentrations in thermodynamic equilibri...
Functions to deal with sets of energy parameters.
Data structure for concentration dependency computations.
Definition: concentrations.h:45
double Bc_start
start concentration B
Definition: concentrations.h:47
double Ac_start
start concentration A
Definition: concentrations.h:46
double ABc
End concentration AB.
Definition: concentrations.h:48