RNAlib-2.5.1
The RNAlib API
Our library is grouped into several modules, each addressing different aspects of RNA secondary structure related problems. You can find an overview of the different groups below.
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 Free Energy EvaluationFunctions and variables related to free energy evaluation of sequence/structure pairs
 The RNA Folding GrammarThe RNA folding grammar as implemented in RNAlib
 The RNA Secondary Structure Landscape
 Minimum Free Energy (MFE) AlgorithmsPredicting the Minimum Free Energy (MFE) and a corresponding (consensus) secondary structure
 Partition Function and Equilibrium PropertiesCompute the partition function to assess various equilibrium properties
 Suboptimals and Representative StructuresSample and enumerate suboptimal secondary structures from RNA sequence data
 RNA-RNA Interaction
 Classified Dynamic Programming Variants
 Inverse Folding (Design)RNA sequence design
 Experimental Structure Probing DataInclude Experimental Structure Probing Data to Guide Structure Predictions
 Ligands Binding to RNA StructuresSimple Extensions to Model Ligand Binding to RNA Structures
 Structure Modules and Pseudoknots
 Utilities