Variables compound for 2Dfold partition function folding.
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char * | ptype |
| Precomputed array of pair types.
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char * | sequence |
| The input sequence
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short * | S1 |
| The input sequences in numeric form.
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unsigned int | maxD1 |
| Maximum allowed base pair distance to first reference.
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unsigned int | maxD2 |
| Maximum allowed base pair distance to second reference.
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int * | my_iindx |
| Index for moving in quadratic distancy dimensions.
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int * | jindx |
| Index for moving in the triangular matrix qm1.
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unsigned int * | referenceBPs1 |
| Matrix containing number of basepairs of reference structure1 in interval [i,j].
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unsigned int * | referenceBPs2 |
| Matrix containing number of basepairs of reference structure2 in interval [i,j].
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unsigned int * | bpdist |
| Matrix containing base pair distance of reference structure 1 and 2 on interval [i,j].
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unsigned int * | mm1 |
| Maximum matching matrix, reference struct 1 disallowed.
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unsigned int * | mm2 |
| Maximum matching matrix, reference struct 2 disallowed.
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Variables compound for 2Dfold partition function folding.
- Deprecated:
- This data structure will be removed from the library soon! Use vrna_fold_compound_t and the corresponding functions vrna_fold_compound_TwoD(), vrna_pf_TwoD(), and vrna_fold_compound_free() instead!
The documentation for this struct was generated from the following file: