RNAlib-2.5.1
svm.h
1#ifndef VIENNA_RNA_PACKAGE_UTILS_SVM_H
2#define VIENNA_RNA_PACKAGE_UTILS_SVM_H
3
4extern char *avg_model_string;
5extern char *sd_model_string;
6
7float get_z(char *sequence,
8 double energy);
9double avg_regression (int N,
10 int A,
11 int C,
12 int G,
13 int T,
14 struct svm_model *avg_model,
15 int *info );
16double sd_regression (int N,
17 int A,
18 int C,
19 int G,
20 int T,
21 struct svm_model *sd_model);
22double minimal_sd (int N,
23 int A,
24 int C,
25 int G,
26 int T);
27struct svm_model *svm_load_model_string(char *modelString);
28int *get_seq_composition( short *S,
29 unsigned int start,
30 unsigned int stop,
31 unsigned int length);
32
33#endif