1#ifndef VIENNA_RNA_PACKAGE_FILE_FORMATS_MSA_H
2#define VIENNA_RNA_PACKAGE_FILE_FORMATS_MSA_H
22#define VRNA_FILE_FORMAT_MSA_CLUSTAL 1U
28#define VRNA_FILE_FORMAT_MSA_STOCKHOLM 2U
34#define VRNA_FILE_FORMAT_MSA_FASTA 4U
40#define VRNA_FILE_FORMAT_MSA_MAF 8U
50#define VRNA_FILE_FORMAT_MSA_MIS 16U
56#define VRNA_FILE_FORMAT_MSA_DEFAULT ( \
57 VRNA_FILE_FORMAT_MSA_CLUSTAL \
58 | VRNA_FILE_FORMAT_MSA_STOCKHOLM \
59 | VRNA_FILE_FORMAT_MSA_FASTA \
60 | VRNA_FILE_FORMAT_MSA_MAF \
67#define VRNA_FILE_FORMAT_MSA_NOCHECK 4096U
73#define VRNA_FILE_FORMAT_MSA_UNKNOWN 8192U
79#define VRNA_FILE_FORMAT_MSA_APPEND 16384U
85#define VRNA_FILE_FORMAT_MSA_QUIET 32768U
91#define VRNA_FILE_FORMAT_MSA_SILENT 65536U
151 unsigned int options);
216 unsigned int options);
246 unsigned int options);
271 const char *structure,
273 unsigned int options);