RNAlib-2.5.1
Data Structures
Here are the data structures with brief descriptions:
 C_struct_enData structure for energy_of_move()
 CconstrainConstraints for cofolding
 CCOORDINATEThis is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type COORDINATE
 CduplexTData structure for RNAduplex
 CdupVarData structure used in RNApkplex
 CinteractInteraction data structure for RNAup
 CLIST
 CLST_BUCKET
 CnodeData structure for RNAsnoop (fold energy list)
 CPostorder_listPostorder data structure
 Cpu_contribContributions to p_u
 Cpu_outCollection of all free_energy of beeing unpaired values for output
 CsnoopTData structure for RNAsnoop
 CswStringSome other data structure
 CTreeTree data structure
 CTwoDfold_varsVariables compound for 2Dfold MFE folding
 CTwoDpfold_varsVariables compound for 2Dfold partition function folding
 Cvrna_alignment_s
 Cvrna_basepair_sBase pair data structure used in subopt.c
 Cvrna_bp_stack_sBase pair stack element
 Cvrna_color_s
 Cvrna_cpair_sThis datastructure is used as input parameter in functions of PS_dot.c
 Cvrna_data_linear_s
 Cvrna_dimer_conc_sData structure for concentration dependency computations
 Cvrna_dimer_pf_sData structure returned by vrna_pf_dimer()
 Cvrna_dotplot_auxdata_t
 Cvrna_elem_prob_sData structure representing a single entry of an element probability list (e.g. list of pair probabilities)
 Cvrna_exp_param_sThe data structure that contains temperature scaled Boltzmann weights of the energy parameters
 Cvrna_fc_sThe most basic data structure required by many functions throughout the RNAlib
 Cvrna_gr_aux_s
 Cvrna_hc_sThe hard constraints data structure
 Cvrna_hc_up_sA single hard constraint for a single nucleotide
 Cvrna_heat_capacity_sA single result from heat capacity computations
 Cvrna_ht_entry_db_tDefault hash table entry
 Cvrna_hx_sData structure representing an entry of a helix list
 Cvrna_md_sThe data structure that contains the complete model details used throughout the calculations
 Cvrna_move_sAn atomic representation of the transition / move from one structure to its neighbor
 Cvrna_multimer_pf_s
 Cvrna_mx_mfe_sMinimum Free Energy (MFE) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound_t
 Cvrna_mx_pf_sPartition function (PF) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound_t
 Cvrna_param_sThe datastructure that contains temperature scaled energy parameters
 Cvrna_path_sAn element of a refolding path list
 Cvrna_pinfo_sA base pair info structure
 Cvrna_pk_plex_result_sA result of the RNA PKplex interaction prediction
 Cvrna_plot_layout_s
 Cvrna_plot_options_puzzler_tOptions data structure for RNApuzzler algorithm implementation
 Cvrna_sc_bp_storage_tA base pair constraint
 Cvrna_sc_motif_s
 Cvrna_sc_sThe soft constraints data structure
 Cvrna_sect_sStack of partial structures for backtracking
 Cvrna_sequence_sData structure representing a nucleotide sequence
 Cvrna_sol_TwoD_pf_tSolution element returned from vrna_pf_TwoD()
 Cvrna_sol_TwoD_tSolution element returned from vrna_mfe_TwoD()
 Cvrna_structured_domains_s
 Cvrna_subopt_sol_sSolution element from subopt.c
 Cvrna_unstructured_domain_motif_s
 Cvrna_unstructured_domain_sData structure to store all functionality for ligand binding