1#ifndef VIENNA_RNA_PACKAGE_PLOT_STRUCTURE_H
2#define VIENNA_RNA_PACKAGE_PLOT_STRUCTURE_H
8#ifdef VRNA_WARN_DEPRECATED
10# define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
11# elif defined(__GNUC__)
12# define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
14# define DEPRECATED(func, msg) func
17# define DEPRECATED(func, msg) func
46 const char *structure,
71 const char *structure,
79vrna_file_PS_rnaplot_layout(
const char *seq,
80 const char *structure,
87#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
91PS_rna_plot_snoop_a(
const char *
string,
92 const char *structure,
169 "Use vrna_file_PS_rnaplot() instead");
182 "Use vrna_file_PS_rnaplot_a() instead");
195 "Use vrna_file_PS_rnaplot_a() instead");
Implementation of the RNApuzzler RNA secondary structure layout algorithm .
The data structure that contains the complete model details used throughout the calculations.
Definition: model.h:180
int PS_rna_plot(char *string, char *structure, char *file)
Produce a secondary structure graph in PostScript and write it to 'filename'.
int vrna_file_PS_rnaplot_a(const char *seq, const char *structure, const char *file, const char *pre, const char *post, vrna_md_t *md_p)
Produce a secondary structure graph in PostScript including additional annotation macros and write it...
int xrna_plot(char *string, char *structure, char *ssfile)
Produce a secondary structure plot for further editing in XRNA.
int PS_rna_plot_a_gquad(char *string, char *structure, char *ssfile, char *pre, char *post)
Produce a secondary structure graph in PostScript including additional annotation macros and write it...
int PS_rna_plot_a(char *string, char *structure, char *file, char *pre, char *post)
Produce a secondary structure graph in PostScript including additional annotation macros and write it...
int gmlRNA(char *string, char *structure, char *ssfile, char option)
Produce a secondary structure graph in Graph Meta Language (gml) and write it to a file.
int vrna_file_PS_rnaplot(const char *seq, const char *structure, const char *file, vrna_md_t *md_p)
Produce a secondary structure graph in PostScript and write it to 'filename'.
int ssv_rna_plot(char *string, char *structure, char *ssfile)
Produce a secondary structure graph in SStructView format.
int svg_rna_plot(char *string, char *structure, char *ssfile)
Produce a secondary structure plot in SVG format and write it to a file.
Secondary structure plot layout algorithms.
The model details data structure and its corresponding modifiers.