1#ifndef VIENNA_RNA_PACKAGE_OLD_EPARS__
2#define VIENNA_RNA_PACKAGE_OLD_EPARS__
50PRIVATE
double Tmeasure_184 = 37 +
K0;
51PRIVATE
double lxc37_184 = 107.856;
57 {
INF, -240, -330, -210, -140, -210, -210, NST},
58 {
INF, -330, -340, -250, -150, -220, -240, NST},
59 {
INF, -210, -250, 130, -50, -140, -130, NST},
60 {
INF, -140, -150, -50, 30, -60, -100, NST},
61 {
INF, -210, -220, -140, -60, -110, -90, NST},
62 {
INF, -210, -240, -130, -100, -90, -130, NST},
63 {
INF, NST, NST, NST, NST, NST, NST, NST}};
70 {
INF, -1060, -1340, -1210, -560, -1050, -1040, NST},
71 {
INF, -1340, -1490, -1260, -830, -1140, -1240, NST},
72 {
INF, -1210, -1260, -1460, -1350, -880, -1280, NST},
73 {
INF, -560, -830, -1350, -930, -320, -700, NST},
74 {
INF, -1050, -1140, -880, -320, -940, -680, NST},
75 {
INF, -1040, -1240, -1280, -700, -680, -770, NST},
76 {
INF, NST, NST, NST, NST, NST, NST, NST}};
80PRIVATE
int oldhairpin37_184[31] = {
81 INF,
INF,
INF, 410, 490, 440, 470, 500, 510, 520, 531,
82 542, 551, 560, 568, 575, 582, 589, 595, 601, 606,
83 611, 616, 621, 626, 630, 634, 638, 642, 646, 650};
85PRIVATE
int hairpin37_184[31] = {
86 INF,
INF,
INF, 570, 560, 560, 540, 590, 560, 640, 650,
87 660, 670, 678, 686, 694, 701, 707, 713, 719, 725,
88 730, 735, 740, 744, 749, 753, 757, 761, 765, 769};
90PRIVATE
int oldbulge37_184[31] = {
91 INF, 390, 310, 350, 420, 480, 500, 516, 531, 543, 555,
92 565, 574, 583, 591, 598, 605, 612, 618, 624, 630,
93 635, 640, 645, 649, 654, 658, 662, 666, 670, 673};
95PRIVATE
int bulge37_184[31] = {
96 INF, 380, 280, 320, 360, 400, 440, 459, 470, 480, 490,
97 500, 510, 519, 527, 534, 541, 548, 554, 560, 565,
98 571, 576, 580, 585, 589, 594, 598, 602, 605, 609};
100PRIVATE
int oldinternal_loop37_184[31] = {
101 INF,
INF, 410, 510, 490, 530, 570, 587, 601, 614, 625,
102 635, 645, 653, 661, 669, 676, 682, 688, 694, 700,
103 705, 710, 715, 720, 724, 728, 732, 736, 740, 744};
105PRIVATE
int internal_loop37_184[31] = {
106 INF,
INF, 410, 510, 170, 180, 200, 220, 230, 240, 250,
107 260, 270, 278, 286, 294, 301, 307, 313, 319, 325,
108 330, 335, 340, 345, 349, 353, 357, 361, 365, 369};
112PRIVATE
int mismatchI37_184[
NBPAIRS+1][5][5] =
114 {{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0}},
129 { 0, 70, 70, -40, 70},
130 { 0, 70, 70, 70, 70},
131 { 0, -40, 70, 70, 70},
132 { 0, 70, 70, 70, 0}},
135 { 0, 70, 70, -40, 70},
136 { 0, 70, 70, 70, 70},
137 { 0, -40, 70, 70, 70},
138 { 0, 70, 70, 70, 0}},
141 { 0, 70, 70, -40, 70},
142 { 0, 70, 70, 70, 70},
143 { 0, -40, 70, 70, 70},
144 { 0, 70, 70, 70, 0}},
147 { 0, 70, 70, -40, 70},
148 { 0, 70, 70, 70, 70},
149 { 0, -40, 70, 70, 70},
150 { 0, 70, 70, 70, 0}},
152 { 90, 90, 90, 90, 90},{ 90, 90, 90, 90,-20},{ 90, 90, 90, 90, 90},
153 { 90,-20, 90, 90, 90},{ 90, 90, 90, 90, 20}}
157PRIVATE
int mismatchH37_184[
NBPAIRS+1][5][5] =
159 {{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0}},
162 { -90, -150, -150, -140, -180},
163 { -90, -100, -90, -290, -80},
164 { -90, -220, -200, -160, -110},
165 { -90, -170, -140, -180, -200}},
168 { -70, -110, -150, -130, -210},
169 { -70, -110, -70, -240, -50},
170 { -70, -240, -290, -140, -120},
171 { -70, -190, -100, -220, -150}},
174 { 0, 20, -50, -30, -30},
175 { 0, -10, -20, -150, -20},
176 { 0, -90, -110, -30, 0},
177 { 0, -30, -30, -40, -110}},
180 { 0, -50, -30, -60, -50},
181 { 0, -20, -10, -170, 0},
182 { 0, -80, -120, -30, -70},
183 { 0, -60, -10, -60, -80}},
186 { 0, -30, -50, -30, -30},
187 { 0, -10, -20, -150, -20},
188 { 0, -110, -120, -20, 20},
189 { 0, -30, -30, -60, -110}},
192 { 0, -50, -30, -60, -50},
193 { 0, -20, -10, -120, -0},
194 { 0, -140, -120, -70, -20},
195 { 0, -30, -10, -50, -80}},
197 { 0, 0, 0, 0, 0},{ 0, 0, 0, 0, 0},{ 0, 0, 0, 0, 0},
198 { 0, 0, 0, 0, 0},{ 0, 0, 0, 0, 0}}
202PRIVATE
int mismatchM37_184[
NBPAIRS+1][5][5];
206PRIVATE
int mism_H_184[
NBPAIRS+1][5][5] =
208 {{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0}},
211 { DEF,-1030, -950,-1030,-1030},
212 { DEF, -520, -450, -520, -670},
213 { DEF, -940, -940, -940, -940},
214 { DEF, -810, -740, -810, -860}},
217 { DEF, -520, -880, -560, -880},
218 { DEF, -720, -310, -310, -390},
219 { DEF, -710, -740, -620, -740},
220 { DEF, -500, -500, -500, -570}},
223 { DEF, -430, -600, -600, -600},
224 { DEF, -260, -240, -240, -240},
225 { DEF, -340, -690, -690, -690},
226 { DEF, -330, -330, -330, -330}},
229 { DEF, -720, -790, -960, -810},
230 { DEF, -480, -480, -360, -480},
231 { DEF, -660, -810, -920, -810},
232 { DEF, -550, -440, -550, -360}},
235 { DEF, -430, -600, -600, -600},
236 { DEF, -260, -240, -240, -240},
237 { DEF, -340, -690, -690, -690},
238 { DEF, -330, -330, -330, -330}},
241 { DEF, -400, -630, -890, -590},
242 { DEF, -430, -510, -200, -180},
243 { DEF, -380, -680, -890, -680},
244 { DEF, -280, -140, -280, -140}},
246 {DEF,DEF,DEF,DEF,DEF},{DEF,DEF,DEF,DEF,DEF},{DEF,DEF,DEF,DEF,DEF},
247 {DEF,DEF,DEF,DEF,DEF},{DEF,DEF,DEF,DEF,DEF}}
251PRIVATE
int dangle5_37_184[
NBPAIRS+1][5]=
254 {
INF, -50, -30, -20, -10},
255 {
INF, -20, -30, -0, -0},
256 {
INF, -30, -30, -40, -20},
257 {
INF, -30, -10, -20, -20},
258 {
INF, -30, -30, -40, -20},
259 {
INF, -30, -10, -20, -20},
264PRIVATE
int dangle3_37_184[
NBPAIRS+1][5]=
267 {
INF, -110, -40, -130, -60},
268 {
INF, -170, -80, -170, -120},
269 {
INF, -70, -10, -70, -10},
270 {
INF, -80, -50, -80, -60},
271 {
INF, -70, -10, -70, -10},
272 {
INF, -80, -50, -80, -60},
277PRIVATE
int dangle3_H_184[
NBPAIRS+1][5] =
280 { 0, -740, -280, -640, -360},
281 { 0, -900, -410, -860, -750},
282 { 0, -740, -240, -720, -490},
283 { 0, -490, -90, -550, -230},
284 { 0, -570, -70, -580, -220},
285 { 0, -490, -90, -550, -230},
289PRIVATE
int dangle5_H_184[
NBPAIRS+1][5] =
292 { 0, -240, 330, 80, -140},
293 { 0, -160, 70, -460, -40},
294 { 0, 160, 220, 70, 310},
295 { 0, -150, 510, 10, 100},
296 { 0, 160, 220, 70, 310},
297 { 0, -50, 690, -60, -60},
305PRIVATE
int ML_BASE37_184 = 0;
306PRIVATE
int ML_closing37_184 = 340;
307PRIVATE
int ML_intern37_184 = 40;
311PRIVATE
int MAX_NINIO_184 = 300;
312PRIVATE
int F_ninio37_184[5] = { 0, 40, 50, 20, 10 };
316PRIVATE
char Tetraloops_184[1400] =
349PRIVATE
int TETRA_ENERGY37_184[200] = {
350 -300, -300, -300, -300, -300, -300, -300, -300, -300, -250, -250, -250,
351 -250, -250, -200, -200, -200, -200, -200, -150, -150, -150, -150, -150,
352 -150, -150, -150, -150, -150, -150};
354PRIVATE
int TETRA_ENTH37_184 = -400;
356PRIVATE
char Triloops_184[241] =
"";
358PRIVATE
int Triloop_E37_184[40];
362PRIVATE
int TerminalAU_184 = 50;
365PRIVATE
int DuplexInit_184 = 410;
#define INF
Definition: constants.h:17
#define K0
Definition: constants.h:15
#define NBPAIRS
Definition: constants.h:25