1#ifndef VIENNA_RNA_PACKAGE_WALK_H
2#define VIENNA_RNA_PACKAGE_WALK_H
24#define VRNA_PATH_STEEPEST_DESCENT 128
30#define VRNA_PATH_RANDOM 256
36#define VRNA_PATH_NO_TRANSITION_OUTPUT 512
43#define VRNA_PATH_DEFAULT (VRNA_PATH_STEEPEST_DESCENT | VRNA_MOVESET_DEFAULT)
77 unsigned int options);
104 unsigned int options);
133 unsigned int options);
The Basic Fold Compound API.
The most basic data structure required by many functions throughout the RNAlib.
Definition: fold_compound.h:148
An atomic representation of the transition / move from one structure to its neighbor.
Definition: move.h:73
vrna_move_t * vrna_path_gradient(vrna_fold_compound_t *vc, short *pt, unsigned int options)
Compute a steepest descent / gradient path, store the final structure, and return a list of transitio...
vrna_move_t * vrna_path_random(vrna_fold_compound_t *vc, short *pt, unsigned int steps, unsigned int options)
Generate a random walk / path of a given length, store the final structure, and return a list of tran...
vrna_move_t * vrna_path(vrna_fold_compound_t *vc, short *pt, unsigned int steps, unsigned int options)
Compute a path, store the final structure, and return a list of transition moves from the start to th...
Methods to operate with structural neighbors of RNA secondary structures.