1#ifndef VIENNA_RNA_PACKAGE_PROFILEDIST_H
2#define VIENNA_RNA_PACKAGE_PROFILEDIST_H
4#ifdef VRNA_WARN_DEPRECATED
6# define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
7# elif defined(__GNUC__)
8# define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
10# define DEPRECATED(func, msg) func
13# define DEPRECATED(func, msg) func
20#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
69"Use Make_bp_profile_bppm() instead");
Various data structures and pre-processor macros.
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: basic.h:43
float * Make_bp_profile(int length)
float * Make_bp_profile_bppm(FLT_OR_DBL *bppm, int length)
condense pair probability matrix into a vector containing probabilities for unpaired,...
void print_bppm(const float *T)
print string representation of probability profile
void free_profile(float *T)
free space allocated in Make_bp_profile
float profile_edit_distance(const float *T1, const float *T2)
Align the 2 probability profiles T1, T2 .