Package: mpack-dev Source: mpack Version: 0.8.0 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 119664 Depends: libc6 (>= 2.29), libgcc1 (>= 1:4.3), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mpack-dev Provides: mpack-dev Filename: ./amd64/mpack-dev_0.8.0_amd64.deb Size: 22008604 MD5sum: 63fd1265782e06ccc1f13cf797e0796e SHA1: c1f90f964f3cd51fed577cf09418ebb3f4fb9ac0 SHA256: 89e63a8a1b0b9e63f32e1004c344971af2d9dcb1b2f99c16bba820bc5fd48786 Section: devel Priority: optional Description: mpack - mpack development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: pourrna Version: 1.1.0-1 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 1782 Depends: libc6 (>= 2.29), libgcc1 (>= 1:3.0), libstdc++6 (>= 7), viennarna-dev (>= 2.4.11) Conflicts: pourrna Provides: pourrna Filename: ./amd64/pourrna_1.1.0-1_amd64.deb Size: 249396 MD5sum: fdf83c2d12e296fdae3d61940ba35779 SHA1: 5fcd8e8485751ef22afddf553616cd57f68bae27 SHA256: 2ee46cffc2d84e0da255a6c7260d0580dd36789b7634689a5af2592c3cfc7b2b Section: science Priority: optional Description: Compute local minima and respective transition rates of an RNA energy landscape. pourRNA takes an RNA sequence as input and explores the landscape topology locally. This means the flooding algorithm will be applied for each gradient basin. The partition function for the basin and also for the transitions to neighbored minima will be calculated during the flooding. In order to speed up the computation of the rate matrix, local filtering techniques can be applied. These filters prune non-relevant transitions directly after flooding a gradient basin. As a result, the transition rates for the filtered landscape topology can be calculated faster than with global approaches. The advantage increases with increasing size of the energy landscape. Package: pourrna Version: 1.2.0-1 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 1782 Depends: libc6 (>= 2.29), libgcc1 (>= 1:3.0), libstdc++6 (>= 7), viennarna-dev (>= 2.4.11) Conflicts: pourrna Provides: pourrna Filename: ./amd64/pourrna_1.2.0-1_amd64.deb Size: 250392 MD5sum: f4b5c6666de1f92500b50de64dfc4491 SHA1: 1d9262020adcbd6c3d4c8f4387528081c2aeaa37 SHA256: 752c63375459669e975e9020445d278451a5f11ceba66a141239e2a3ab627c47 Section: science Priority: optional Description: Compute local minima and respective transition rates of an RNA energy landscape. pourRNA takes an RNA sequence as input and explores the landscape topology locally. This means the flooding algorithm will be applied for each gradient basin. The partition function for the basin and also for the transitions to neighbored minima will be calculated during the flooding. In order to speed up the computation of the rate matrix, local filtering techniques can be applied. These filters prune non-relevant transitions directly after flooding a gradient basin. As a result, the transition rates for the filtered landscape topology can be calculated faster than with global approaches. The advantage increases with increasing size of the energy landscape. Package: python3-rnaxplorer Source: rnaxplorer Version: 0.9.0 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 8 Depends: python3 Conflicts: python3-rnaxplorer Filename: ./amd64/python3-rnaxplorer_0.9.0_amd64.deb Size: 1764 MD5sum: 740bdeba68d4612092868e427082a638 SHA1: 84518269fef4bc69a248dcb9b04153f249d363aa SHA256: eca7a8fe7a829dd2554b6180d0a7bd7753d4c3f8a002f7e47af9ad64a34c189c Section: python Priority: optional Description: Python 3 bindings to RNAxplorerlib The RNAxplorer class to access RNAxplorerlib C-library functions from within Python 3 scripts Package: rnaxplorer Version: 0.9.0 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 8 Depends: viennarna-dev (>= 2.4.14) Recommends: python-rnaxplorer Conflicts: rnaxplorer Provides: rnaxplorer Filename: ./amd64/rnaxplorer_0.9.0_amd64.deb Size: 1880 MD5sum: 81173326b4aaa3240f50afb1b07c60cd SHA1: 06d028bd4a3e6cda4a84c95be024e40d43d280be SHA256: 38ec03af1f11327565f9bfc228f6632e0cd38ba21fbad2f0c57a4120287fce22 Section: science Priority: optional Description: Sample RNA secondary structures and explore the RNA energy landscape. RNAxplorer takes an RNA sequence as input and samples secondary structures that represent the most important structures of the RNA conformation space and thus are well suited to compute RNA folding kinetics.