Package: mpack-dev Source: mpack Version: 0.8.0 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 119275 Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.3), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mpack-dev Provides: mpack-dev Filename: ./amd64/mpack-dev_0.8.0_amd64.deb Size: 21777164 MD5sum: 92c8c3fcd7d819de89c83c17f9e8adfe SHA1: 01a60f12dc293d5be7c98ccdc26899b92e7ccce8 SHA256: 93bc0f24ac28f0aaa6400853af4411b20557509a61caedb8f8393b589c9154d9 Section: devel Priority: optional Description: mpack - mpack development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: pourrna Version: 1.1.0-1 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 1782 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 7), viennarna-dev (>= 2.4.11) Conflicts: pourrna Provides: pourrna Filename: ./amd64/pourrna_1.1.0-1_amd64.deb Size: 250220 MD5sum: d72d67645abc6ebdd1901f8a99a4180b SHA1: 8666e4a4c24222eff6c003f0958fcc3c8a4be21e SHA256: cce6750eff73fcc9d3b317c875d6afe10ad67369d333fc140259410f3067ec53 Section: science Priority: optional Description: Compute local minima and respective transition rates of an RNA energy landscape. pourRNA takes an RNA sequence as input and explores the landscape topology locally. This means the flooding algorithm will be applied for each gradient basin. The partition function for the basin and also for the transitions to neighbored minima will be calculated during the flooding. In order to speed up the computation of the rate matrix, local filtering techniques can be applied. These filters prune non-relevant transitions directly after flooding a gradient basin. As a result, the transition rates for the filtered landscape topology can be calculated faster than with global approaches. The advantage increases with increasing size of the energy landscape. Package: pourrna Version: 1.2.0-1 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 1782 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 7), viennarna-dev (>= 2.4.11) Conflicts: pourrna Provides: pourrna Filename: ./amd64/pourrna_1.2.0-1_amd64.deb Size: 250880 MD5sum: c2491afb02b1439ec95b74fb1bc4cdb5 SHA1: a0b395f76d45b02bddffdb0a7f686fe92e866f0a SHA256: 300c5b34b2a0fb73e786f392f9d02d21a75dc9e3ba3093b2aaa6e72092bbb2c4 Section: science Priority: optional Description: Compute local minima and respective transition rates of an RNA energy landscape. pourRNA takes an RNA sequence as input and explores the landscape topology locally. This means the flooding algorithm will be applied for each gradient basin. The partition function for the basin and also for the transitions to neighbored minima will be calculated during the flooding. In order to speed up the computation of the rate matrix, local filtering techniques can be applied. These filters prune non-relevant transitions directly after flooding a gradient basin. As a result, the transition rates for the filtered landscape topology can be calculated faster than with global approaches. The advantage increases with increasing size of the energy landscape. Package: python3-rnaxplorer Source: rnaxplorer Version: 0.9.0 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 8 Depends: python3 Conflicts: python3-rnaxplorer Filename: ./amd64/python3-rnaxplorer_0.9.0_amd64.deb Size: 1764 MD5sum: 740bdeba68d4612092868e427082a638 SHA1: 84518269fef4bc69a248dcb9b04153f249d363aa SHA256: eca7a8fe7a829dd2554b6180d0a7bd7753d4c3f8a002f7e47af9ad64a34c189c Section: python Priority: optional Description: Python 3 bindings to RNAxplorerlib The RNAxplorer class to access RNAxplorerlib C-library functions from within Python 3 scripts Package: rnaxplorer Version: 0.9.0 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 8 Depends: viennarna-dev (>= 2.4.14) Recommends: python-rnaxplorer Conflicts: rnaxplorer Provides: rnaxplorer Filename: ./amd64/rnaxplorer_0.9.0_amd64.deb Size: 1880 MD5sum: 81173326b4aaa3240f50afb1b07c60cd SHA1: 06d028bd4a3e6cda4a84c95be024e40d43d280be SHA256: 38ec03af1f11327565f9bfc228f6632e0cd38ba21fbad2f0c57a4120287fce22 Section: science Priority: optional Description: Sample RNA secondary structures and explore the RNA energy landscape. RNAxplorer takes an RNA sequence as input and samples secondary structures that represent the most important structures of the RNA conformation space and thus are well suited to compute RNA folding kinetics.