Package: mpack-dev
Source: mpack
Version: 0.8.0
Architecture: amd64
Maintainer: Maho Nakata <maho@riken.jp>
Installed-Size: 115256
Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.3), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev
Conflicts: mpack-dev
Provides: mpack-dev
Filename: ./amd64/mpack-dev_0.8.0_amd64.deb
Size: 21317288
MD5sum: c738fc48225109293364a336d76db6a4
SHA1: de1708b9da9a64dbf28c51277ed9eec85c53be31
SHA256: 4a9869460cba026574c269dc78faa27b8422da7412a9f201b699acfd0bb46dcb
Section: devel
Priority: optional
Description: mpack - mpack development files
 The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK.
 This package is rewritten in C++, and supports several high precision
 libraries like GMP, MPFR and QD etc so that users can choose for user's
 convenience. The MPACK is a free software (2-clause BSD style license with
 original license by LAPACK).

Package: pourrna
Version: 1.1.0-1
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 1802
Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 7), viennarna-dev (>= 2.4.11)
Conflicts: pourrna
Provides: pourrna
Filename: ./amd64/pourrna_1.1.0-1_amd64.deb
Size: 260176
MD5sum: 7e75c52bfa071736fcdee2f8d5a8164b
SHA1: 5fad0be507a2de4c6107b5ba3b3db6f3a5d6a8cf
SHA256: 17617629d5ebcd4f0041708a3da458521210a62825ec6655feae4ead28a998b4
Section: science
Priority: optional
Description: Compute local minima and respective transition rates of an RNA energy landscape.
 pourRNA takes an RNA sequence as input and explores the landscape topology
 locally. This means the flooding algorithm will be applied for each gradient
 basin. The partition function for the basin and also for the transitions to
 neighbored minima will be calculated during the flooding.
 In order to speed up the computation of the rate matrix, local filtering
 techniques can be applied. These filters prune non-relevant transitions
 directly after flooding a gradient basin. As a result, the transition rates
 for the filtered landscape topology can be calculated faster than with global
 approaches. The advantage increases with increasing size of the energy
 landscape.

Package: pourrna
Version: 1.2.0-1
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 1802
Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 7), viennarna-dev (>= 2.4.11)
Conflicts: pourrna
Provides: pourrna
Filename: ./amd64/pourrna_1.2.0-1_amd64.deb
Size: 260860
MD5sum: 3321749fe2fe631a7c7ed550fc0609b8
SHA1: 4b892b7429043d6bead24937f2917ba9b74fb390
SHA256: 27fb6c06e2c0ed9aa862f723da5dc8c997090d87203a27a23998656b207417df
Section: science
Priority: optional
Description: Compute local minima and respective transition rates of an RNA energy landscape.
 pourRNA takes an RNA sequence as input and explores the landscape topology
 locally. This means the flooding algorithm will be applied for each gradient
 basin. The partition function for the basin and also for the transitions to
 neighbored minima will be calculated during the flooding.
 In order to speed up the computation of the rate matrix, local filtering
 techniques can be applied. These filters prune non-relevant transitions
 directly after flooding a gradient basin. As a result, the transition rates
 for the filtered landscape topology can be calculated faster than with global
 approaches. The advantage increases with increasing size of the energy
 landscape.

Package: python3-rnaxplorer
Source: rnaxplorer
Version: 0.9.0
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 8
Depends: python3
Conflicts: python3-rnaxplorer
Filename: ./amd64/python3-rnaxplorer_0.9.0_amd64.deb
Size: 1764
MD5sum: 740bdeba68d4612092868e427082a638
SHA1: 84518269fef4bc69a248dcb9b04153f249d363aa
SHA256: eca7a8fe7a829dd2554b6180d0a7bd7753d4c3f8a002f7e47af9ad64a34c189c
Section: python
Priority: optional
Description: Python 3 bindings to RNAxplorerlib
 The RNAxplorer class to access RNAxplorerlib C-library functions from
 within Python 3 scripts

Package: rnaxplorer
Version: 0.9.0
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 8
Depends: viennarna-dev (>= 2.4.14)
Recommends: python-rnaxplorer
Conflicts: rnaxplorer
Provides: rnaxplorer
Filename: ./amd64/rnaxplorer_0.9.0_amd64.deb
Size: 1880
MD5sum: 81173326b4aaa3240f50afb1b07c60cd
SHA1: 06d028bd4a3e6cda4a84c95be024e40d43d280be
SHA256: 38ec03af1f11327565f9bfc228f6632e0cd38ba21fbad2f0c57a4120287fce22
Section: science
Priority: optional
Description: Sample RNA secondary structures and explore the RNA energy landscape.
 RNAxplorer takes an RNA sequence as input and samples secondary structures that
 represent the most important structures of the RNA conformation space and thus
 are well suited to compute RNA folding kinetics.