Package: mpack-dev Source: mpack Version: 0.8.0 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 115256 Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.3), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mpack-dev Provides: mpack-dev Filename: ./amd64/mpack-dev_0.8.0_amd64.deb Size: 21317288 MD5sum: c738fc48225109293364a336d76db6a4 SHA1: de1708b9da9a64dbf28c51277ed9eec85c53be31 SHA256: 4a9869460cba026574c269dc78faa27b8422da7412a9f201b699acfd0bb46dcb Section: devel Priority: optional Description: mpack - mpack development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: pourrna Version: 1.1.0-1 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 1802 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 7), viennarna-dev (>= 2.4.11) Conflicts: pourrna Provides: pourrna Filename: ./amd64/pourrna_1.1.0-1_amd64.deb Size: 260176 MD5sum: 7e75c52bfa071736fcdee2f8d5a8164b SHA1: 5fad0be507a2de4c6107b5ba3b3db6f3a5d6a8cf SHA256: 17617629d5ebcd4f0041708a3da458521210a62825ec6655feae4ead28a998b4 Section: science Priority: optional Description: Compute local minima and respective transition rates of an RNA energy landscape. pourRNA takes an RNA sequence as input and explores the landscape topology locally. This means the flooding algorithm will be applied for each gradient basin. The partition function for the basin and also for the transitions to neighbored minima will be calculated during the flooding. In order to speed up the computation of the rate matrix, local filtering techniques can be applied. These filters prune non-relevant transitions directly after flooding a gradient basin. As a result, the transition rates for the filtered landscape topology can be calculated faster than with global approaches. The advantage increases with increasing size of the energy landscape. Package: pourrna Version: 1.2.0-1 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 1802 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 7), viennarna-dev (>= 2.4.11) Conflicts: pourrna Provides: pourrna Filename: ./amd64/pourrna_1.2.0-1_amd64.deb Size: 260860 MD5sum: 3321749fe2fe631a7c7ed550fc0609b8 SHA1: 4b892b7429043d6bead24937f2917ba9b74fb390 SHA256: 27fb6c06e2c0ed9aa862f723da5dc8c997090d87203a27a23998656b207417df Section: science Priority: optional Description: Compute local minima and respective transition rates of an RNA energy landscape. pourRNA takes an RNA sequence as input and explores the landscape topology locally. This means the flooding algorithm will be applied for each gradient basin. The partition function for the basin and also for the transitions to neighbored minima will be calculated during the flooding. In order to speed up the computation of the rate matrix, local filtering techniques can be applied. These filters prune non-relevant transitions directly after flooding a gradient basin. As a result, the transition rates for the filtered landscape topology can be calculated faster than with global approaches. The advantage increases with increasing size of the energy landscape. Package: python3-rnaxplorer Source: rnaxplorer Version: 0.9.0 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 8 Depends: python3 Conflicts: python3-rnaxplorer Filename: ./amd64/python3-rnaxplorer_0.9.0_amd64.deb Size: 1764 MD5sum: 740bdeba68d4612092868e427082a638 SHA1: 84518269fef4bc69a248dcb9b04153f249d363aa SHA256: eca7a8fe7a829dd2554b6180d0a7bd7753d4c3f8a002f7e47af9ad64a34c189c Section: python Priority: optional Description: Python 3 bindings to RNAxplorerlib The RNAxplorer class to access RNAxplorerlib C-library functions from within Python 3 scripts Package: rnaxplorer Version: 0.9.0 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 8 Depends: viennarna-dev (>= 2.4.14) Recommends: python-rnaxplorer Conflicts: rnaxplorer Provides: rnaxplorer Filename: ./amd64/rnaxplorer_0.9.0_amd64.deb Size: 1880 MD5sum: 81173326b4aaa3240f50afb1b07c60cd SHA1: 06d028bd4a3e6cda4a84c95be024e40d43d280be SHA256: 38ec03af1f11327565f9bfc228f6632e0cd38ba21fbad2f0c57a4120287fce22 Section: science Priority: optional Description: Sample RNA secondary structures and explore the RNA energy landscape. RNAxplorer takes an RNA sequence as input and samples secondary structures that represent the most important structures of the RNA conformation space and thus are well suited to compute RNA folding kinetics.