Package: mpack-dev Source: mpack Version: 0.8.0 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 120805 Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.3), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mpack-dev Provides: mpack-dev Filename: ./amd64/mpack-dev_0.8.0_amd64.deb Size: 22155344 MD5sum: 7b81004bacfaf95bbb214e8bcbed43f1 SHA1: 7effaadb136811bc078703a05a9aea2561f5c5e3 SHA256: 16c0709851395a77654e5667b5ca104945a34505c14e94e0aae46065e327d962 Section: devel Priority: optional Description: mpack - mpack development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: mpack-dev Source: mpack Version: 0.8.0 Architecture: i386 Maintainer: Maho Nakata Installed-Size: 107283 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mpack-dev Provides: mpack-dev Filename: ./i386/mpack-dev_0.8.0_i386.deb Size: 19791816 MD5sum: 37c2c70ab7c2885cf17e4bdf4a859f51 SHA1: c845fb6264d6b2658fda8d696672a74a21a7460d SHA256: cee54cbbd90aca59e779c1d8a621a09ad806757f53aecbfdb19c969f62cf5477 Section: devel Priority: optional Description: mpack - mpack development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: mpack-dev-dbgsym Source: mpack Version: 0.8.0 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 141826 Depends: mpack-dev (= 0.8.0) Filename: ./amd64/mpack-dev-dbgsym_0.8.0_amd64.deb Size: 140490208 MD5sum: c15b822b7a8930fa0ab5ab7fa39f5e49 SHA1: dd15bb789d149439bf45f462aaed1e5ff6d8163b SHA256: 304412add8d8a9c618faf77f472d4fb9ce960243614350cb404b167a3e8e1670 Section: debug Priority: optional Description: debug symbols for mpack-dev Build-Ids: 212c68c605df7317e0bcc0959ddc9533e98a87d1 2b0ac0023dcf231a281ea52c4d66ee1be0c19688 4c91c6595393e6861234490a4154a91f4f91f736 594188118713c9bd888b1a5a6c9f5d3ead23690c 699834045ae6ea443dd579b674e127cfc0b97d5b 6fb2a41c7c927ee6e4775ebc7718b4b1ba80517b 8dc75ff23708c38c59b87591bb2d512edd90bbdf 95498666b27e6472a8711f8ceebc79a13784eff5 958d96e053415bbfb5fac4243cb69e61c424991b 9993c9080d4c8c202dcd29a58a9b0d5356507712 beb4a8a0c0d12c6058d9f22be89fd9c36b7f2c1c cd5121b3b792ee75f619917bc371f6df760fd797 d0bd337072056eca09cd322b1171d9ace8093f06 f8ac47f45d17e5c61893697d67aa659cd699fafc f9e22662e458c8c7db828145723f03a152f9d9bf Package: mpack-dev-dbgsym Source: mpack Version: 0.8.0 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Maho Nakata Installed-Size: 125963 Depends: mpack-dev (= 0.8.0) Filename: ./i386/mpack-dev-dbgsym_0.8.0_i386.deb Size: 124730076 MD5sum: 386090b1f633f89e23dee1e76cd76337 SHA1: a1f2a350550a14255617f3a09fe30082e6052e46 SHA256: eb325ad5d7624b497b8eb102680ff9b59b4f584cc0a8473b0d8d20cccc40a8e3 Section: debug Priority: optional Description: debug symbols for mpack-dev Build-Ids: 05de47975cf3fc6ade87e0c55b8fc0ec859a1012 38407888c271b354b2fb3dadb23394895b6c4762 4ca3014cc7c5087cacb85294d9d32181295274f3 4f00e6ebec219445938ad313bb69ed3bc2fbbe84 521473a51a73f992fa59878d4b37d5118c12c8bc 5505e4728f559225dca299a2a789e0c960c80bf9 7c04f50eb7e5de61a662d955a713d7f3cbf831a9 b4c8048144327d6e3356f2f185a41708b4262636 b9c80ae07552d0d75eb352f07599768611390c68 c217e8aa130b93ad593df56d79664c9283305113 d83c7580d20809c40de51c551c59a56e5be0d842 e0af7350f0e6e3aaa34b212f559bb4890ec7c7c6 e77833f57c4dc68f8672762280a62ea0f4f423a0 ea95dfa1922bf5e2f07cb2f9afa29f289e6b0f89 fbf5605d18b385ad66e85e89668f0be0942ef8b2 Package: pourrna Version: 1.1.0-1 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 1808 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 7), viennarna-dev (>= 2.4.11) Conflicts: pourrna Provides: pourrna Filename: ./amd64/pourrna_1.1.0-1_amd64.deb Size: 261520 MD5sum: 1f32d2da097282a6755d8246d08c8e87 SHA1: 05f72cb59bc001de561eb2265ac9372752f5dd68 SHA256: a5ff44bd6548d1bf58702d5f158551ec8e904f886f1cc19e4bcf857922840ad6 Section: science Priority: optional Description: Compute local minima and respective transition rates of an RNA energy landscape. pourRNA takes an RNA sequence as input and explores the landscape topology locally. This means the flooding algorithm will be applied for each gradient basin. The partition function for the basin and also for the transitions to neighbored minima will be calculated during the flooding. In order to speed up the computation of the rate matrix, local filtering techniques can be applied. These filters prune non-relevant transitions directly after flooding a gradient basin. As a result, the transition rates for the filtered landscape topology can be calculated faster than with global approaches. The advantage increases with increasing size of the energy landscape. Package: pourrna Version: 1.2.0-1 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 1808 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 7), viennarna-dev (>= 2.4.11) Conflicts: pourrna Provides: pourrna Filename: ./amd64/pourrna_1.2.0-1_amd64.deb Size: 262780 MD5sum: 12a412d30400e90592b7a309a86ec457 SHA1: 7c27d4d64181fd2f277b4169aa1319d17d57825a SHA256: e92821dd79e3c16ff865ccb2830f48278e5d7548cfaac81dc0316c9095964fda Section: science Priority: optional Description: Compute local minima and respective transition rates of an RNA energy landscape. pourRNA takes an RNA sequence as input and explores the landscape topology locally. This means the flooding algorithm will be applied for each gradient basin. The partition function for the basin and also for the transitions to neighbored minima will be calculated during the flooding. In order to speed up the computation of the rate matrix, local filtering techniques can be applied. These filters prune non-relevant transitions directly after flooding a gradient basin. As a result, the transition rates for the filtered landscape topology can be calculated faster than with global approaches. The advantage increases with increasing size of the energy landscape. Package: pourrna-dbgsym Source: pourrna Version: 1.1.0-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 2060 Depends: pourrna (= 1.1.0-1) Filename: ./amd64/pourrna-dbgsym_1.1.0-1_amd64.deb Size: 1870276 MD5sum: 158ee63e826289c7c1ac48633b9d42d6 SHA1: 1b4ff691055ee158793a9a1883093beafec7839d SHA256: b7c524a0edb7d450eee51529d0ca502b85fe63f10f45d544fde75813429561d5 Section: debug Priority: optional Description: debug symbols for pourrna Build-Ids: 66b1e2472537175ae5afe61d9b6659e36f866a1d Package: pourrna-dbgsym Source: pourrna Version: 1.2.0-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 2060 Depends: pourrna (= 1.2.0-1) Filename: ./amd64/pourrna-dbgsym_1.2.0-1_amd64.deb Size: 1871392 MD5sum: 4028e8c1f686cda09dd41ab5b8e76263 SHA1: 5dd57fa86870649657938c8aaef6a57f25792b82 SHA256: a6dfc9fafce7e5e184efac76fd28d357777e6fe099a25e6822414410ad6186d3 Section: debug Priority: optional Description: debug symbols for pourrna Build-Ids: 4429396706af1012e5a905c13595746f95020971 Package: python3-rnaxplorer Source: rnaxplorer Version: 0.9.0 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 8 Depends: python3 Conflicts: python3-rnaxplorer Filename: ./amd64/python3-rnaxplorer_0.9.0_amd64.deb Size: 1764 MD5sum: 740bdeba68d4612092868e427082a638 SHA1: 84518269fef4bc69a248dcb9b04153f249d363aa SHA256: eca7a8fe7a829dd2554b6180d0a7bd7753d4c3f8a002f7e47af9ad64a34c189c Section: python Priority: optional Description: Python 3 bindings to RNAxplorerlib The RNAxplorer class to access RNAxplorerlib C-library functions from within Python 3 scripts Package: rnaxplorer Version: 0.9.0 Architecture: amd64 Maintainer: Gregor Entzian Installed-Size: 8 Depends: viennarna-dev (>= 2.4.14) Recommends: python-rnaxplorer Conflicts: rnaxplorer Provides: rnaxplorer Filename: ./amd64/rnaxplorer_0.9.0_amd64.deb Size: 1880 MD5sum: 81173326b4aaa3240f50afb1b07c60cd SHA1: 06d028bd4a3e6cda4a84c95be024e40d43d280be SHA256: 38ec03af1f11327565f9bfc228f6632e0cd38ba21fbad2f0c57a4120287fce22 Section: science Priority: optional Description: Sample RNA secondary structures and explore the RNA energy landscape. RNAxplorer takes an RNA sequence as input and samples secondary structures that represent the most important structures of the RNA conformation space and thus are well suited to compute RNA folding kinetics.