Class TestCasesIntegrationMixedVariants

java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationMixedVariants

public class TestCasesIntegrationMixedVariants extends TestCasesIntegrationBase
Test mixed variants
Author:
pcingola
  • Constructor Details

    • TestCasesIntegrationMixedVariants

      public TestCasesIntegrationMixedVariants()
  • Method Details

    • compareVep

      public void compareVep(String genome, String vcf)
      Compare with results from ENSEMBL's VEP to SnpEff Use VCF having VEP's results
    • test_01_MixedVep

      @Test public void test_01_MixedVep()
      Make sure we can read VCF and parse variants without producing any exception
    • test_02_MixedVep

      @Test public void test_02_MixedVep()
    • test_03_MixedVep

      @Test public void test_03_MixedVep()
    • test_04_MixedVep

      @Test public void test_04_MixedVep()
    • test_05_MixedVep

      @Test public void test_05_MixedVep()
    • test_06_MixedVep

      @Test public void test_06_MixedVep()
    • test_07_MixedVep

      @Test public void test_07_MixedVep()
    • test_08_MixedVep

      @Test public void test_08_MixedVep()
    • test_09_MixedVep

      @Test public void test_09_MixedVep()
    • test_11_ExonRank

      @Test public void test_11_ExonRank()