Uses of Class
org.snpeff.snpEffect.testCases.unity.TestCasesBase
Packages that use TestCasesBase
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Uses of TestCasesBase in org.snpeff.snpEffect.testCases.integration
Subclasses of TestCasesBase in org.snpeff.snpEffect.testCases.integration -
Uses of TestCasesBase in org.snpeff.snpEffect.testCases.unity
Subclasses of TestCasesBase in org.snpeff.snpEffect.testCases.unityModifier and TypeClassDescriptionclass
Test case for parsing ANN fieldsclass
Test cases: apply a variant (DEL) to a transcriptclass
Test cases: apply a variant (INS) to a transcriptclass
Test cases: apply a variant (MIXED) to a transcriptclass
Test cases: apply a variant (MNP) to a transcriptclass
Test cases: apply a variant (SNP) to a transcriptclass
Test caseclass
Test caseclass
Test random SNP changesclass
Test random DEL changesclass
class
Test Splice sites variantsclass
Test caseclass
Test case for FASTA file parsingclass
Test cases for file index (chr:pos index on files)class
Test case for basic HGV annotationsclass
Test caseclass
Test cases for HGVS's 'dup' on the negative strandclass
Test caseclass
Test random SNP changesclass
Test intergenic markersclass
class
Test random Interval Variants (e.g.class
class
Test case for Jaspar parsingclass
Test random SNP changesclass
Test cases for protein interactionclass
Seekable file reader test caseclass
class
Test random SNP changesclass
Test Splice sites variantsclass
Test Splice sites variantsclass
Test case Gene: geneId1 1:957-1157, strand: +, id:transcript_0, Protein Exons: 1:957-988 'exon_0_0', rank: 1, frame: ., sequence: gttgcttgaatactgtatagccttgccattgt 1:1045-1057 'exon_0_1', rank: 2, frame: ., sequence: tgtgttgctaact 1:1148-1157 'exon_0_2', rank: 3, frame: ., sequence: agacatggac CDS : gttgcttgaatactgtatagccttgccattgttgtgttgctaactagacatggac Protein : VA*ILYSLAIVVLLTRHG?class
Test case for structural variants: Duplicationsclass
Test cases for structural variants: Inversionsclass
Test cases for variant realignmentclass
VCF parsing test casesclass
Test playground