Class CompareToVep

java.lang.Object
org.snpeff.snpEffect.testCases.integration.CompareToVep

public class CompareToVep extends Object
Compare our results to ENSEML's Variant Effect predictor's output
Author:
pcingola
  • Constructor Details

    • CompareToVep

      public CompareToVep(String genomeName, boolean verbose)
    • CompareToVep

      public CompareToVep(String genomeName, String[] addArgs, boolean verbose)
  • Method Details

    • checkComapred

      public boolean checkComapred()
    • compareVep

      public void compareVep(String vcf)
      Compare all VCF entries
    • setCompareHgvs

      public void setCompareHgvs()
    • setCompareHgvsDna

      public void setCompareHgvsDna(boolean compareHgvsDna)
    • setCompareHgvsProt

      public void setCompareHgvsProt(boolean compareHgvsProt)
    • setOnlyProtein

      public void setOnlyProtein(boolean onlyProtein)
    • setShiftHgvs

      public void setShiftHgvs(boolean shiftHgvs)
    • setStrict

      public void setStrict(boolean strict)
    • toString

      public String toString()
      Overrides:
      toString in class Object