Class VcfLof

java.lang.Object
org.snpeff.vcf.VcfLof
Direct Known Subclasses:
VcfNmd

public class VcfLof extends Object
An 'LOF' entry in a vcf line
Author:
pablocingolani
  • Constructor Details

    • VcfLof

      public VcfLof(Gene gene, double percentAffected)
    • VcfLof

      public VcfLof(String lofStr)
    • VcfLof

      public VcfLof(String geneName, String geneId, int numTranscripts, double percentAffected)
    • VcfLof

      public VcfLof(VcfEntry vcfEntry, String lofStr)
  • Method Details

    • fieldNum

      public static int fieldNum(String name)
      Convert from field name to field number
    • getGeneId

      public String getGeneId()
    • getGeneName

      public String getGeneName()
    • getNumTranscripts

      public int getNumTranscripts()
    • getPercentAffected

      public double getPercentAffected()
    • getPercentAffectedStr

      public String getPercentAffectedStr()
    • getVcfEntry

      public VcfEntry getVcfEntry()
    • toString

      public String toString()
      Overrides:
      toString in class Object