Package org.snpeff.sam
Class SamHeaderRecordSq
java.lang.Object
org.snpeff.sam.SamHeaderRecord
org.snpeff.sam.SamHeaderRecordSq
SQ header: Reference sequence dictionary. The order of @SQ lines defines the alignment sorting order.
- Author:
- pcingola
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class org.snpeff.sam.SamHeaderRecord
getRecordTypeCode, parse
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Constructor Details
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SamHeaderRecordSq
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Method Details
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getAssembly
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getLength
public int getLength() -
getMd5
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getSequenceName
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getSpecies
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getUri
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init
protected void init()Description copied from class:SamHeaderRecord
Initialize records before parsing- Overrides:
init
in classSamHeaderRecord
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parseField
Description copied from class:SamHeaderRecord
Parse a field for this record- Specified by:
parseField
in classSamHeaderRecord
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toString
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