Class TestCasesIntegrationSnp
java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationSnp
Test SNP variants
- Author:
- pcingola
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Field Summary
Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
Change of start codon to an alternative start codonvoid
Stop gained should have 'HIGH' impactvoid
Change of start codon to an alternative start codonMethods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, before, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Constructor Details
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TestCasesIntegrationSnp
public TestCasesIntegrationSnp()
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Method Details
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test_02_Start_NonSyn
@Test public void test_02_Start_NonSyn()Change of start codon to an alternative start codon -
test_02_StopGained_HighImpact
@Test public void test_02_StopGained_HighImpact()Stop gained should have 'HIGH' impact -
test_03_Start_Loss
@Test public void test_03_Start_Loss()Change of start codon to an alternative start codon
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