Package org.snpeff.vcf
Class PedigreeEntry
java.lang.Object
org.snpeff.vcf.PedigreeEntry
Pedigree entry in a VCF file header
E.g.:
##PEDIGREE=<Derived=Patient_01_Somatic,Original=Patient_01_Germline>
or
##PEDIGREE=<Child=CHILD-GENOME-ID,Mother=MOTHER-GENOME-ID,Father=FATHER-GENOME-ID>
- Author:
- pcingola
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Field Summary
Fields -
Constructor Summary
ConstructorsConstructorDescriptionPedigreeEntry
(String original, String derived) PedigreeEntry
(String father, String mother, String child) -
Method Summary
Modifier and TypeMethodDescriptionint
int
boolean
Is this an 'Original-Derived' entry type?void
sampleNumbers
(List<String> sampleNames) Find sample numbers in a list of sample namestoString()
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Field Details
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father
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mother
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child
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fatherNum
public int fatherNum -
motherNum
public int motherNum -
childNum
public int childNum
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Constructor Details
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PedigreeEntry
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PedigreeEntry
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Method Details
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getDerived
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getDerivedNum
public int getDerivedNum() -
getOriginal
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getOriginalNum
public int getOriginalNum() -
isDerived
public boolean isDerived()Is this an 'Original-Derived' entry type?- Returns:
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sampleNumbers
Find sample numbers in a list of sample names- Parameters:
sampleNames
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toString
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