Class TestCasesGenePvalueList

java.lang.Object
org.snpeff.snpEffect.testCases.unity.TestCasesGenePvalueList

public class TestCasesGenePvalueList extends Object
GenePvalueList statistics test case
Author:
pcingola
  • Field Details

  • Constructor Details

    • TestCasesGenePvalueList

      public TestCasesGenePvalueList()
  • Method Details

    • test_01

      @Test public void test_01()
      Combined p-value : MIN
    • test_02

      @Test public void test_02()
      Combined p-value : AVG
    • test_03

      @Test public void test_03()
      Combined p-value : AVG10
    • test_04

      @Test public void test_04()
      Complementary CDF for Chi^2 distribution
    • test_05

      @Test public void test_05()
      Combined p-value : FISHER_CHI_SQUARE
    • test_06

      @Test public void test_06()
      Combined p-value : Z_SCORES
    • test_07

      @Test public void test_07()
      Combined p-value : FDR

      Reference for this test: http://stat.ethz.ch/R-manual/R-devel/library/stats/html/p.adjust.html

      R code: set.seed(123) x <- rnorm(50, mean = c(rep(0, 25), rep(3, 25))) p <- 2*pnorm(sort(-abs(x))) p.adjust(p, "fdr")

    • test_08

      @Test public void test_08()
      Test quantile
    • test_09

      @Test public void test_09()
      Test CDF (cumulative distribution function)