Uses of Interface
org.snpeff.stats.SamplingStats
Packages that use SamplingStats
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Uses of SamplingStats in org.snpeff.stats
Classes in org.snpeff.stats that implement SamplingStatsModifier and TypeClassDescriptionclass
Count singletons and other allele counts per sampleclass
Calculate statistics on genotypeclass
Count Hom/Het per sample From Pierre: For multiple ALT, I suggest to count the number of REF allele 0/1 => ALT1 0/2 => ALT1 1/1 => ALT2 2/2 => ALT2 1/2 => ALT2class
Calculate Ts/Tv rations per sample (transitions vs transversions)class
Variants effect statisticsclass
Variants statisticsclass
Count variant types (SNP, MNP, INS, DEL)class
VCF statistics: This are usually multi-sample statistics