Class TestCasesProteinInteraction
java.lang.Object
org.snpeff.snpEffect.testCases.unity.TestCasesBase
org.snpeff.snpEffect.testCases.unity.TestCasesBaseApply
org.snpeff.snpEffect.testCases.unity.TestCasesProteinInteraction
Test cases for protein interaction
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Field Summary
Fields inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
addUtrs, BASE_DIR, chromoBases, chromoSequence, chromosome, codonTable, config, debug, gene, genome, genomeName, maxExons, maxGeneLen, maxTranscripts, minExons, numGenes, onlyMinusStrand, onlyPlusStrand, prefixes, rand, randSeed, shiftHgvs, snpEffectPredictor, spliceRegionExonSize, spliceRegionIntronMax, spliceRegionIntronMin, testType, transcript, verbose
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
Get protein interaction loci when a codon is split by an intronvoid
Get protein interaction loci when a codon is split by an intronMethods inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBaseApply
initSnpEffPredictor
Methods inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
after, before, checkApply, checkApplyDel, checkApplyIns, checkApplyMixed, checkApplyMnp, checkApplySnp, checkEffect, checkEffect, formatVersion, hasEffect, init, initRand, initSnpEffPredictor, path, pathClassName, prependSequenceToFirstExon
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Constructor Details
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TestCasesProteinInteraction
public TestCasesProteinInteraction()
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Method Details
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test_01_split_codon_base
@Test public void test_01_split_codon_base()Get protein interaction loci when a codon is split by an intron -
test_02_split_codon_base
@Test public void test_02_split_codon_base()Get protein interaction loci when a codon is split by an intron
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