Uses of Enum Class
org.snpeff.interval.Variant.VariantType
Packages that use Variant.VariantType
Package
Description
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Uses of Variant.VariantType in org.snpeff.align
Methods in org.snpeff.align that return Variant.VariantTypeMethods in org.snpeff.align with parameters of type Variant.VariantTypeModifier and TypeMethodDescriptionvoid
VcfRefAltAlign.setVariantType
(Variant.VariantType variantType) -
Uses of Variant.VariantType in org.snpeff.interval
Fields in org.snpeff.interval declared as Variant.VariantTypeMethods in org.snpeff.interval that return Variant.VariantTypeModifier and TypeMethodDescriptionVariant.getVariantType()
static Variant.VariantType
Returns the enum constant of this class with the specified name.static Variant.VariantType[]
Variant.VariantType.values()
Returns an array containing the constants of this enum class, in the order they are declared.Methods in org.snpeff.interval with parameters of type Variant.VariantType -
Uses of Variant.VariantType in org.snpeff.snpEffect.testCases.unity
Methods in org.snpeff.snpEffect.testCases.unity with parameters of type Variant.VariantTypeModifier and TypeMethodDescriptionvoid
TestCasesBase.checkApply
(Variant variant, Variant.VariantType varType, String expectedCds, String expectedProtein, int exonRank, int expectedExon1Start, int expectedExon1End) Apply a variant to a transcript and check resulting CDS sequence, protein sequence and exon coordinates -
Uses of Variant.VariantType in org.snpeff.stats
Methods in org.snpeff.stats that return Variant.VariantType