Uses of Class
org.snpeff.binseq.DnaAndQualitySequence
Packages that use DnaAndQualitySequence
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Uses of DnaAndQualitySequence in org.snpeff.binseq
Subclasses of DnaAndQualitySequence in org.snpeff.binseqModifier and TypeClassDescriptionclass
DnaAndQualitySequence with an IDMethods in org.snpeff.binseq that return DnaAndQualitySequenceModifier and TypeMethodDescriptionstatic DnaAndQualitySequence
DnaAndQualitySequence.empty()
DnaAndQualitySequence.overlap
(BinarySequence sequence, int start) Creates a new sequence by overlapping 'this' and 'sequence' E.g.DnaAndQualitySequence.read
(DataInputStream dataInStream) Read data in binary formatDnaAndQualitySequence.reverseWc()
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Uses of DnaAndQualitySequence in org.snpeff.binseq.comparator
Methods in org.snpeff.binseq.comparator with parameters of type DnaAndQualitySequenceModifier and TypeMethodDescriptionint
DnaQualSubsequenceComparator.compare
(DnaAndQualitySequence seq1, int index1, DnaAndQualitySequence seq2, int index2) int
DnaQualSubsequenceComparator.score
(DnaAndQualitySequence seq1, int index1, DnaAndQualitySequence seq2, int index2)