Uses of Package
org.snpeff.snpEffect
Packages that use org.snpeff.snpEffect
Package
Description
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Classes in org.snpeff.snpEffect used by org.snpeff
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Classes in org.snpeff.snpEffect used by org.snpeff.binseq
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Classes in org.snpeff.snpEffect used by org.snpeff.coverage
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Classes in org.snpeff.snpEffect used by org.snpeff.filterClassDescriptionEffect type: Note that effects are sorted (declared) by impact (highest to lowest putative impact).Effect of a variant.
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Classes in org.snpeff.snpEffect used by org.snpeff.intervalClassDescriptionEffect type: Note that effects are sorted (declared) by impact (highest to lowest putative impact).Errors and warningsEffect of a variant.A sorted collection of variant effects
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Classes in org.snpeff.snpEffect used by org.snpeff.interval.codonChangeClassDescriptionEffect type: Note that effects are sorted (declared) by impact (highest to lowest putative impact).Effect of a variant.A sorted collection of variant effects
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Classes in org.snpeff.snpEffect used by org.snpeff.motifClassDescriptionEffect type: Note that effects are sorted (declared) by impact (highest to lowest putative impact).
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Classes in org.snpeff.snpEffect used by org.snpeff.nextProt
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Classes in org.snpeff.snpEffect used by org.snpeff.outputFormatter
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Classes in org.snpeff.snpEffect used by org.snpeff.snpEffectClassDescriptionEffect type: Note that effects are sorted (declared) by impact (highest to lowest putative impact).Errors and warningsHGSV notation References: http://www.hgvs.org/Predicts effects of SNPsEffect of a variant.This class is only getFused for SNPsA sorted collection of variant effectsEffect of a structural variant affecting multiple genesAnnotate a VCF file: E.g.
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Classes in org.snpeff.snpEffect used by org.snpeff.snpEffect.commandLine
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Classes in org.snpeff.snpEffect used by org.snpeff.snpEffect.factory
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Classes in org.snpeff.snpEffect used by org.snpeff.snpEffect.testCases.integrationClassDescriptionErrors and warningsPredicts effects of SNPs
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Classes in org.snpeff.snpEffect used by org.snpeff.snpEffect.testCases.unityClassDescriptionEffect type: Note that effects are sorted (declared) by impact (highest to lowest putative impact).Predicts effects of SNPs
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Classes in org.snpeff.snpEffect used by org.snpeff.spliceSites
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Classes in org.snpeff.snpEffect used by org.snpeff.stats
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Classes in org.snpeff.snpEffect used by org.snpeff.svg
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Classes in org.snpeff.snpEffect used by org.snpeff.util
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Classes in org.snpeff.snpEffect used by org.snpeff.vcfClassDescriptionEffect type: Note that effects are sorted (declared) by impact (highest to lowest putative impact).Effect of a variant.This class is only getFused for SNPs