Class RegulationGffFileIterator

All Implemented Interfaces:
Iterable<Regulation>, Iterator<Regulation>

public class RegulationGffFileIterator extends RegulationFileIterator
Opens a GFF3 file and create regulatory elements. Example of regulatory GFF file: ftp://ftp.ensembl.org/pub/release-63/regulation/homo_sapiens/AnnotatedFeatures.gff.gz References (GFF3) : http://www.sequenceontology.org/gff3.shtml
Author:
pcingola
  • Field Details

  • Constructor Details

    • RegulationGffFileIterator

      public RegulationGffFileIterator(String fileName)
    • RegulationGffFileIterator

      public RegulationGffFileIterator(String fileName, Genome genome)
  • Method Details