Class TestCasesIntegrationGff3

java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationGff3

public class TestCasesIntegrationGff3 extends TestCasesIntegrationBase
Test case for GFF3 file parsing
Author:
pcingola
  • Constructor Details

    • TestCasesIntegrationGff3

      public TestCasesIntegrationGff3()
  • Method Details

    • after

      @AfterEach public void after()
    • before

      @BeforeEach public void before()
      Overrides:
      before in class TestCasesIntegrationBase
    • testCase_01_Exon_Simple

      @Test public void testCase_01_Exon_Simple()
    • testCase_02_ExonIn

      @Test public void testCase_02_ExonIn()
    • testCase_03_ExonOut

      @Test public void testCase_03_ExonOut()
    • testCase_04_AthalianaTair10_AT5G66790

      @Test public void testCase_04_AthalianaTair10_AT5G66790()
    • testCase_05_PaeruPA14muccA

      @Test public void testCase_05_PaeruPA14muccA()
    • testCase_06_Ppersica

      @Test public void testCase_06_Ppersica()
    • testCase_07_Rice5

      @Test public void testCase_07_Rice5()
    • testCase_08_Vibrio

      @Test public void testCase_08_Vibrio()
    • testCase_09

      @Test public void testCase_09()
    • testCase_09_AP

      @Test public void testCase_09_AP()
    • testCase_10_MaizeZmB73

      @Test public void testCase_10_MaizeZmB73()
      Exon.frameCorrection: Exon too short (size: 1), cannot correct frame!
    • testCase_11_mita

      @Test public void testCase_11_mita()
      Test for bug: Infinite loop when looking up "Parent ID" in some GFF3 files