Class TestCasesIntegrationStructural
java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationStructural
Test SNP variants
- Author:
- pcingola
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Field Summary
Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
Duplication creates a gene fusionvoid
Duplication creates a gene fusionvoid
Deletion creates a gene fusionvoid
Deletion creates a gene fusionvoid
Deletion creates a gene fusionvoid
Annotate intron rank in gene_fusionMethods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, before, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Constructor Details
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TestCasesIntegrationStructural
public TestCasesIntegrationStructural()
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Method Details
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test_01_DUP_fusion
@Test public void test_01_DUP_fusion()Duplication creates a gene fusion -
test_02_INV_fusion
@Test public void test_02_INV_fusion()Duplication creates a gene fusion -
test_03_DEL_fusion
@Test public void test_03_DEL_fusion()Deletion creates a gene fusion -
test_04_fusion
@Test public void test_04_fusion()Deletion creates a gene fusion -
test_05_fusion
@Test public void test_05_fusion()Deletion creates a gene fusion -
test_06_fusion
@Test public void test_06_fusion()Annotate intron rank in gene_fusion
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