Class TestCasesIntegrationVcfs

java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationVcfs

public class TestCasesIntegrationVcfs extends TestCasesIntegrationBase
VCF annotations test cases
Author:
pcingola
  • Constructor Details

    • TestCasesIntegrationVcfs

      public TestCasesIntegrationVcfs()
  • Method Details

    • create1kgFile

      public static void create1kgFile()
      Creates a test file
    • test_01_vcf_bed_filter

      @Test public void test_01_vcf_bed_filter()
    • test_02_Annotating_LOF_Spaces

      @Test public void test_02_Annotating_LOF_Spaces()
      Annotating LOF / NMD using a geneName that contains spaces triggers an Exception (it shouldn't happen)
    • test_03_do_not_annotate_non_variants

      @Test public void test_03_do_not_annotate_non_variants()
      Non-variant VCF entries should be skipped (i.e. no annotation should be added)