Class CompareToVep
java.lang.Object
org.snpeff.snpEffect.testCases.integration.CompareToVep
Compare our results to ENSEML's Variant Effect predictor's output
- Author:
- pcingola
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Constructor Summary
ConstructorsConstructorDescriptionCompareToVep
(String genomeName, boolean verbose) CompareToVep
(String genomeName, String[] addArgs, boolean verbose) -
Method Summary
Modifier and TypeMethodDescriptionboolean
void
compareVep
(String vcf) Compare all VCF entriesvoid
void
setCompareHgvsDna
(boolean compareHgvsDna) void
setCompareHgvsProt
(boolean compareHgvsProt) void
setOnlyProtein
(boolean onlyProtein) void
setShiftHgvs
(boolean shiftHgvs) void
setStrict
(boolean strict) toString()
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Constructor Details
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CompareToVep
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CompareToVep
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Method Details
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checkComapred
public boolean checkComapred() -
compareVep
Compare all VCF entries -
setCompareHgvs
public void setCompareHgvs() -
setCompareHgvsDna
public void setCompareHgvsDna(boolean compareHgvsDna) -
setCompareHgvsProt
public void setCompareHgvsProt(boolean compareHgvsProt) -
setOnlyProtein
public void setOnlyProtein(boolean onlyProtein) -
setShiftHgvs
public void setShiftHgvs(boolean shiftHgvs) -
setStrict
public void setStrict(boolean strict) -
toString
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