Class TestCasesIntegrationMotif

java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationMotif

public class TestCasesIntegrationMotif extends TestCasesIntegrationBase
Test Motif databases
Author:
pcingola
  • Constructor Details

    • TestCasesIntegrationMotif

      public TestCasesIntegrationMotif()
  • Method Details

    • test_01

      @Test public void test_01()
    • test_01_ann

      @Test public void test_01_ann()
    • test_02

      @Test public void test_02()
    • test_02_ann

      @Test public void test_02_ann()
    • test_03

      @Test public void test_03()
    • test_03_ann

      @Test public void test_03_ann()
    • test_04

      @Test public void test_04()
      MNP outside Motif: Should not throw any exception
    • test_05

      @Test public void test_05()
      Motif has 9 bases but ENSEMBL file marks it as a 10 base interval SNP affect last base (as marked by ENSEMBL), since there is no sequence for that base position, an exception is thrown.