Package org.snpeff.align
package org.snpeff.align
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ClassesClassDescriptionNeedleman-Wunsch (global sequence alignment) algorithm for sequence alignment (short strings, since it's not memory optimized)Needleman-Wunsch algorithm for string alignment (short strings, since it's not memory optimized)Smith-Waterman (local sequence alignment) algorithm for sequence alignment (short strings, since it's not memory optimized)Re-align a variant towards the leftmost (rightmost) position Note: We perform a 'progressive' realignment, asking for more reference sequence as we need itNeedleman-Wunsch (global sequence alignment) algorithm for sequence alignment Only used for short strings (algorithm is not optimized)