Package org.snpeff.reactome.events
Class Pathway
java.lang.Object
org.snpeff.reactome.Entity
org.snpeff.reactome.events.Event
org.snpeff.reactome.events.Reaction
org.snpeff.reactome.events.Pathway
- All Implemented Interfaces:
Comparable<Entity>
,Iterable<Event>
A Reactome pathway
- Author:
- pcingola
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Nested Class Summary
Nested classes/interfaces inherited from class org.snpeff.reactome.events.Reaction
Reaction.RegulationType
Nested classes/interfaces inherited from class org.snpeff.reactome.Entity
Entity.TransferFunction
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Field Summary
Fields inherited from class org.snpeff.reactome.events.Reaction
catalyst, inputs, MAX_WEIGHT_SUM, outputs, regulator
Fields inherited from class org.snpeff.reactome.Entity
BETA, compartment, debug, fixedOutput, geneIds, id, name, output, TRANSFER_FUNCTION, weight
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class org.snpeff.reactome.events.Reaction
addCatalyst, addInput, addOutput, addRegulator, addRegulator, calc, getCatalyst, getInputs, getOutputs, getRegulator, isReaction, scaleWeights, transferFunction
Methods inherited from class org.snpeff.reactome.Entity
addGeneId, calc, compareTo, getCompartment, getGeneIds, getId, getName, getOutput, getWeight, hasOutput, isFixed, reset, setCompartment, setFixedOutput, setWeight, toStringSimple, transferFunction
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
Methods inherited from interface java.lang.Iterable
forEach, spliterator