Class TestCasesCds
java.lang.Object
org.snpeff.snpEffect.testCases.unity.TestCasesBase
org.snpeff.snpEffect.testCases.unity.TestCasesCds
Test random SNP changes
- Author:
- pcingola
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Field Summary
FieldsFields inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
addUtrs, BASE_DIR, chromoBases, chromoSequence, chromosome, codonTable, config, debug, gene, genome, genomeName, maxExons, maxGeneLen, maxTranscripts, minExons, numGenes, onlyMinusStrand, onlyPlusStrand, prefixes, rand, randSeed, shiftHgvs, snpEffectPredictor, spliceRegionExonSize, spliceRegionIntronMax, spliceRegionIntronMin, testType, transcript, verbose
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionprotected void
init()
void
void
Simple CDS start & CSD end casevoid
CDS start & CSD end case where transcript is ALL UTR (nothing codes, presumably because of a database annotation error)Methods inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
after, before, checkApply, checkApplyDel, checkApplyIns, checkApplyMixed, checkApplyMnp, checkApplySnp, checkEffect, checkEffect, formatVersion, hasEffect, initRand, initSnpEffPredictor, initSnpEffPredictor, path, pathClassName, prependSequenceToFirstExon
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Field Details
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N
public static int N
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Constructor Details
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TestCasesCds
public TestCasesCds()
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Method Details
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init
protected void init()- Overrides:
init
in classTestCasesBase
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test_CdsPos
@Test public void test_CdsPos() -
test_cdsStartEnd_1
@Test public void test_cdsStartEnd_1()Simple CDS start & CSD end case -
test_cdsStartEnd_2
@Test public void test_cdsStartEnd_2()CDS start & CSD end case where transcript is ALL UTR (nothing codes, presumably because of a database annotation error)
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