Class TestCasesDnaNSequence
java.lang.Object
org.snpeff.snpEffect.testCases.unity.TestCasesDnaNSequence
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Field Summary
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Constructor Summary
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Method Summary
Modifier and TypeMethodDescriptionvoid
randDnaSeqGetBasesTest
(int numTests, int numTestsPerSeq, int lenMask, long seed) Create random sequences and store them in a DnaNSequence.void
randDnaSeqGetBaseTest
(int numTests, int numTestsPerSeq, int lenMask, long seed) Create random sequences and store them in a DnaNSequence.void
randDnaSeqTest
(int numTests, int lenMask, long seed) Create random sequences and compare to storing them in a DnaNSequencevoid
randReplaceBaseTest
(int numTests, int numTestsPerSeq, int lenMask, long seed) Create random sequences and store them in a DnaNSequence.void
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Field Details
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verbose
public static boolean verbose
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Constructor Details
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TestCasesDnaNSequence
public TestCasesDnaNSequence()
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Method Details
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randDnaSeqGetBasesTest
public void randDnaSeqGetBasesTest(int numTests, int numTestsPerSeq, int lenMask, long seed) Create random sequences and store them in a DnaNSequence. Compare getting a few random bases from the original and DnaNSequence sequences. -
randDnaSeqGetBaseTest
public void randDnaSeqGetBaseTest(int numTests, int numTestsPerSeq, int lenMask, long seed) Create random sequences and store them in a DnaNSequence. Compare getting a single random base from the original and DnaNSequence sequences. -
randDnaSeqTest
public void randDnaSeqTest(int numTests, int lenMask, long seed) Create random sequences and compare to storing them in a DnaNSequence -
randReplaceBaseTest
public void randReplaceBaseTest(int numTests, int numTestsPerSeq, int lenMask, long seed) Create random sequences and store them in a DnaNSequence. Compare after replacing random bases from the original and DnaNSequence sequences. -
test_01_short
@Test public void test_01_short() -
test_01_short_getBase
@Test public void test_01_short_getBase() -
test_01_short_getBases
@Test public void test_01_short_getBases() -
test_01_short_replaceBase
@Test public void test_01_short_replaceBase() -
test_02_long
@Test public void test_02_long() -
test_02_long_getBase
@Test public void test_02_long_getBase() -
test_02_long_getBases
@Test public void test_02_long_getBases() -
test_02_long_replaceBase
@Test public void test_02_long_replaceBase() -
test_13_reverseWc
@Test public void test_13_reverseWc()
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