Package org.snpeff.stats
Class TranslocationReport
java.lang.Object
org.snpeff.stats.TranslocationReport
Pojo for translocation reports
- Author:
- pcingola
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Constructor Summary
ConstructorsConstructorDescriptionTranslocationReport
(VariantBnd var, VcfEffect veff, Transcript tr1, Transcript tr2) -
Method Summary
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Constructor Details
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TranslocationReport
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Method Details
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getChr1
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getChr2
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getGeneName1
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getGeneName2
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getHgvsC
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getHgvsP
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getImpact
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getIndex
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getPos1OneBased
public int getPos1OneBased()Get position (as one-based coordinates) -
getPos2OneBased
public int getPos2OneBased()Get position (as one-based coordinates) -
getSvgPlot
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getTrId1
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getTrId2
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getVariantEffect
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getVcfEffect
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setSvgPlot
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