Class TestCasesDnaNSequence

java.lang.Object
org.snpeff.snpEffect.testCases.unity.TestCasesDnaNSequence

public class TestCasesDnaNSequence extends Object
  • Field Details

    • verbose

      public static boolean verbose
  • Constructor Details

    • TestCasesDnaNSequence

      public TestCasesDnaNSequence()
  • Method Details

    • randDnaSeqGetBasesTest

      public void randDnaSeqGetBasesTest(int numTests, int numTestsPerSeq, int lenMask, long seed)
      Create random sequences and store them in a DnaNSequence. Compare getting a few random bases from the original and DnaNSequence sequences.
    • randDnaSeqGetBaseTest

      public void randDnaSeqGetBaseTest(int numTests, int numTestsPerSeq, int lenMask, long seed)
      Create random sequences and store them in a DnaNSequence. Compare getting a single random base from the original and DnaNSequence sequences.
    • randDnaSeqTest

      public void randDnaSeqTest(int numTests, int lenMask, long seed)
      Create random sequences and compare to storing them in a DnaNSequence
    • randReplaceBaseTest

      public void randReplaceBaseTest(int numTests, int numTestsPerSeq, int lenMask, long seed)
      Create random sequences and store them in a DnaNSequence. Compare after replacing random bases from the original and DnaNSequence sequences.
    • test_01_short

      @Test public void test_01_short()
    • test_01_short_getBase

      @Test public void test_01_short_getBase()
    • test_01_short_getBases

      @Test public void test_01_short_getBases()
    • test_01_short_replaceBase

      @Test public void test_01_short_replaceBase()
    • test_02_long

      @Test public void test_02_long()
    • test_02_long_getBase

      @Test public void test_02_long_getBase()
    • test_02_long_getBases

      @Test public void test_02_long_getBases()
    • test_02_long_replaceBase

      @Test public void test_02_long_replaceBase()
    • test_13_reverseWc

      @Test public void test_13_reverseWc()