Package org.snpeff.align


package org.snpeff.align
  • Classes
    Class
    Description
    Needleman-Wunsch (global sequence alignment) algorithm for sequence alignment (short strings, since it's not memory optimized)
    Needleman-Wunsch algorithm for string alignment (short strings, since it's not memory optimized)
    Smith-Waterman (local sequence alignment) algorithm for sequence alignment (short strings, since it's not memory optimized)
    Re-align a variant towards the leftmost (rightmost) position Note: We perform a 'progressive' realignment, asking for more reference sequence as we need it
    Needleman-Wunsch (global sequence alignment) algorithm for sequence alignment Only used for short strings (algorithm is not optimized)