Class TestCasesEffectCollapse

java.lang.Object
org.snpeff.snpEffect.testCases.unity.TestCasesBase
org.snpeff.snpEffect.testCases.unity.TestCasesEffectCollapse

public class TestCasesEffectCollapse extends TestCasesBase
Test Splice sites variants

The sample transcript used is: Transcript:1:751-1139, strand: +, id:transcript_0, Protein Exons: 1:751-810 'exon_0_0', rank: 1, frame: ., sequence: cgattgacctacatagtaatgagttttgttggtccgtaagacttcgcccaaaaccgcgca 1:1013-1139 'exon_0_1', rank: 2, frame: ., sequence: cttcgactactcgggggtctaagcacgttttctgcagggaaagtaatatatgcttgtgcgcaaccatggtaacagggattcacggccccgttaatggtatgacctaagccccatacgagtcatccaa CDS : cgattgacctacatagtaatgagttttgttggtccgtaagacttcgcccaaaaccgcgcacttcgactactcgggggtctaagcacgttttctgcagggaaagtaatatatgcttgtgcgcaaccatggtaacagggattcacggccccgttaatggtatgacctaagccccatacgagtcatccaa Protein : RLTYIVMSFVGP*DFAQNRALRLLGGLSTFSAGKVIYACAQPW*QGFTAPLMV*PKPHTSHP?

Author:
pcingola
  • Constructor Details

    • TestCasesEffectCollapse

      public TestCasesEffectCollapse()
  • Method Details

    • init

      protected void init()
      Overrides:
      init in class TestCasesBase
    • test_01

      @Test public void test_01()
    • test_02

      @Test public void test_02()
    • test_03

      @Test public void test_03()
    • test_04

      @Test public void test_04()
    • test_05

      @Test public void test_05()