Class TestCasesIntegrationNextProt
java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationNextProt
Test NextProt databases
- Author:
- pcingola
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Field Summary
Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, before, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Constructor Details
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TestCasesIntegrationNextProt
public TestCasesIntegrationNextProt()
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Method Details
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test_01_build
@Test public void test_01_build() -
test_02_ann
@Test public void test_02_ann() -
test_02_eff
@Test public void test_02_eff() -
test_03_ann
@Test public void test_03_ann() -
test_03_eff
@Test public void test_03_eff() -
test_04_parse
@Test public void test_04_parse() -
test_05_ann_disulphide_bond
@Test public void test_05_ann_disulphide_bond() -
test_06_ann_disulphide_bond
@Test public void test_06_ann_disulphide_bond() -
test_07
@Test public void test_07()
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