Uses of Class
org.snpeff.geneSets.algorithm.EnrichmentAlgorithmGreedy
Packages that use EnrichmentAlgorithmGreedy
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Uses of EnrichmentAlgorithmGreedy in org.snpeff.geneSets.algorithm
Subclasses of EnrichmentAlgorithmGreedy in org.snpeff.geneSets.algorithmModifier and TypeClassDescriptionclass
A greedy enrichment algorithm for selecting gene-sets using a variable geneSet-size strategy: i) Select only from geneSets in low-sizes e.g.class
class
Leading edge fraction algorithm References: "Common Inherited Variation in Mitochondrial Genes Is Not Enriched for Associations with Type 2 Diabetes or Related Glycemic Traits" http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001058 See page 12, "Step 4"class