Class TestCasesHgvsProtDup

java.lang.Object
org.snpeff.snpEffect.testCases.unity.TestCasesBase
org.snpeff.snpEffect.testCases.unity.TestCasesHgvsProtDup

public class TestCasesHgvsProtDup extends TestCasesBase
Test case
  • Constructor Details

    • TestCasesHgvsProtDup

      public TestCasesHgvsProtDup()
  • Method Details

    • test_01

      @Test public void test_01()
      Test case: p.Gly4_Gln6dup in the sequence MKMGHQQQCC denotes a duplication of amino acids Glycine-4 (Gly, G) to Glutamine-6 (Gln, Q) (i.e. MKMGHQGHQQQCC)

      Reference: http://www.hgvs.org/mutnomen/recs-prot.html#dup

    • test_02

      @Test public void test_02()
      Reference: http://www.hgvs.org/mutnomen/recs-prot.html#dup duplicating insertions in single amino acid stretches (or short tandem repeats) are described as a duplication, e.g. a duplicating HQ insertion in the HQ-tandem repeat sequence of MKMGHQHQCC to MKMGHQHQHQCC is described as p.His7_Gln8dup (not p.Gln8_Cys9insHisGln)