Uses of Interface
org.snpeff.interval.tree.Itree
Packages that use Itree
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Uses of Itree in org.snpeff.interval.tree
Classes in org.snpeff.interval.tree that implement ItreeModifier and TypeClassDescriptionclass
An Interval Tree is essentially a map from intervals to objects, which can be queried for all data associated with a particular interval of pointclass
Interval tree structure using arrays This is slightly faster than the new IntervalTree implementationclass
An Interval Tree is essentially a map from intervals to objects, which can be queried for all data associated with a particular interval of pointMethods in org.snpeff.interval.tree that return ItreeModifier and TypeMethodDescriptionIntervalForest.getOrCreateTree
(String id) Get (or create) an interval tree for IDIntervalForest.getOrCreateTreeChromo
(String chromo) Get (or create) an interval tree based for "chromo" (chromosome name)Get an interval tree using an IDIntervalForest.getTreeChromo
(String chromo) Get an interval tree using a chromosome nameprotected Itree
IntervalForest.newItree()
Create new tree.Methods in org.snpeff.interval.tree that return types with arguments of type Itree -
Uses of Itree in org.snpeff.snpEffect.testCases.unity
Methods in org.snpeff.snpEffect.testCases.unity that return ItreeMethods in org.snpeff.snpEffect.testCases.unity with parameters of type ItreeModifier and TypeMethodDescriptionprotected int
TestCasesIntervalTree.compareQuery
(Marker m, Itree intTree) Perform a query using 'naive' lookup and interval forest.